Function reference • magrene

All functions

calculate_Z(): Calculate Z-score for motif frequencies

find_bifan(): Find bifan motifs

find_delta(): Find delta motifs

find_lambda(): Find lambda motifs

find_ppi_v(): Find V motifs in protein-protein interactions

find_v(): Find V motifs

generate_nulls(): Generate null distributions of motif counts for each motif type

gma_grn: Sample soybean GRN

gma_paralogs: Soybean (Glycine max) duplicated genes

gma_ppi: Sample soybean PPI network

nulls: Null distribution of motif frequencies for vignette data set

sd_similarity(): Calculate Sorensen-Dice similarity between paralogous gene pairs