Plot expression partitions

Usage

plot_expression_partitions(
  partition_table,
  group_by = "Category",
  palette = NULL,
  labels = c("P1", "F1", "P2")
)

partition_table: A data frame with genes per expression partition as returned by expression_partitioning().
group_by: Character indicating the name of the variable in partition_table to use to group genes. One of "Category" or "Class". Default: "Category".
palette: Character vector with color names to be used for each level of the variable specified in group_by. If group_by = "Category", this must be a vector of length 12. If group_by = "Class", this must be a vector of length 5. If NULL, a default color palette will be used.
labels: A character vector of length 3 indicating the labels to be given for parent 1, offspring, and parent 2. Default: c("P1", "F1", "P2").

A ggplot object with a plot showing genes in each expression partition.

data(deg_list)
partition_table <- expression_partitioning(deg_list)
plot_expression_partitions(partition_table)