Partition genes in groups based on their expression patterns — expression_partitioning • HybridExpress

Partition genes in groups based on their expression patterns

Usage

expression_partitioning(deg_list)

Arguments

deg_list: A list of data frames with gene-wise test statistics for differentially expressed genes as returned by get_deg_list().

Value

A data with the following variables:

Gene: Character, gene ID.
Category: Factor, expression group. Category names are numbers from 1 to 12.
Class: Factor, expression group class. One of "UP" (transgressive up-regulation), "DOWN" (transgressive down-regulation), "ADD" (additivity), "ELD_P1" (expression-level dominance toward the parent 1), or "ELD_P2" (expression-level dominance toward the parent 2).

Examples

data(deg_list)
exp_partitions <- expression_partitioning(deg_list)