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Parse orthogroups identified by OrthoFinder

Source: R/network_comparison.R
parse_orthofinder.Rd

This function converts the orthogroups file named Orthogroups.tsv to a 3-column data frame that can be interpreted by BioNERO.

Usage

parse_orthofinder(file_path = NULL)

Arguments

file_path

Path to Orthogroups/Orthogroups.tsv file generated by OrthoFinder.

Value

A 3-column data frame with orthogroups, species IDs and gene IDs, respectively.

Author

Fabricio Almeida-Silva

Examples

path <- system.file("extdata", "Orthogroups.tsv", package = "BioNERO")
og <- parse_orthofinder(path)