Get GCN hubs — get_hubs_gcn • BioNERO

Get GCN hubs

Usage

get_hubs_gcn(exp, net)

Arguments

exp: A gene expression data frame with genes in row names and samples in column names or a `SummarizedExperiment` object.
net: List object returned by exp2gcn.

Value

Data frame containing gene IDs, modules and intramodular connectivity of all hubs.

See also

Author

Fabricio Almeida-Silva

Examples

data(filt.se)
gcn <- exp2gcn(filt.se, SFTpower = 18, cor_method = "pearson")
#> ..connectivity..
#> ..matrix multiplication (system BLAS)..
#> ..normalization..
#> ..done.
hubs <- get_hubs_gcn(filt.se, gcn)