Create a data frame of species IDs (3-5-character abbreviations)
Usage
create_species_id_table(species_names)
Arguments
- species_names
A character vector of names extracted from
the seq or annotation lists, which can be extracted with
names(seq) or names(annotation).
Value
A 2-column data frame with the following variables:
- species_id
Character, species ID consisting of 3-5 characters.
- species_name
Character, original names passed as input.
Examples
# Load 'seq' list (list of AAStringSet objects)
data(proteomes)
# Create ID table
create_species_id_table(names(proteomes))
#> species_id species_name
#> 1 Olu Olucimarinus
#> 2 Osp OspRCC809
