Metadata and taxonomic information for all species on PLAZA instances
Source:R/data.R
plaza_metadata.RdData provenance metadata were obtained from PLAZA, and taxonomic information were obtained with the taxize package.
Usage
data(plaza_metadata)Format
A list of data frame with elements Dicots, Monocots, Diatoms, and Pico. Each data frame contains metadata for a specific PLAZA instance, with the following variables:
- PLAZA_ID
Character, PLAZA species ID.
- common_name
Character, common species name.
- NCBI_name
Character, NCBI species name.
- NCBI_taxid
Numeric, NCBI Taxonomy ID of the species.
- family
Character, plant family.
- order
Character, plant order.
- class
Character, plant class.
- source
Character, genome accession or version.
- data_provider
Character, data provider.
- pubmed_id
Numeric, PubMed ID of the original publication.
Examples
data(plaza_metadata)