Get anchor pairs in intraspecies syntenic regions — get_block_duplicates • rplaza

Get anchor pairs in intraspecies syntenic regions

Usage

get_block_duplicates(species)

Arguments

species: Character vector of PLAZA species IDs.

Value

A data frame (or list of data frames, in case of multiple species) with the following variables:

multiplicon_id: Numeric, multiplicon ID.
anchor1: Character, gene ID of anchor 1.
anchor2: Character, gene ID of anchor 2.
Ks: Numeric, synonymous substitution rates. If not calculated, NA is used.
level: Numeric, multiplicon level.

Examples

sd <- get_block_duplicates("lpe")