Translate library orientation terminology for each program — translate_strandedness • bears

Translate library orientation terminology for each program

Usage

translate_strandedness(orientation = NULL, layout = NULL)

Arguments

orientation: Library orientation, available in the column "Orientation" from the output of infer_strandedness.
layout: Library layout, available in the column "Layout" from the output of create_sample_info.

Value

A list with the following elements:

salmon: salmon library information.
fcounts: featureCounts library information.
kallisto: kallisto library information.
stringtie: StringTie library information.

Examples

data(sample_info)
orientation <- sample_info$Orientation
layout <- sample_info$Layout
strandedness <- translate_strandedness(orientation, layout)