The goal of bears
is to download RNA-seq data from NCBI SRA, preprocess them, map to the reference genome, and quantify the expression at the gene level. The goal of bears is to make RNA-seq data analysis pipelines reproducible, with a framework built on state-of-the art methods and software tools.
Installation instructions
Get the latest stable R
release from CRAN. Then install bears
from GitHub with:
if (!requireNamespace("remotes", quietly = TRUE)) {
install.packages("remotes")
}
remotes::install_github("almeidasilvaf/bears")
Code of Conduct
Please note that the bears
project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.