Get a count table of differentially expressed genes per contrast

Get a count table of differentially expressed genes per contrast

Usage

get_deg_counts(deg_list)

Arguments

deg_list

A list of data frames with gene-wise test statistics for differentially expressed genes as returned by get_deg_list().

Value

A data frame with the following variables:

contrast

Character, contrast name.

up

Numeric, number of up-regulated genes.

down

Numeric, number of down-regulated genes.

total

Numeric, total number of differentially expressed genes.

perc_up

Numeric, percentage of up-regulated genes.

perc_down

Numeric, percentage of down-regulated genes.

perc_total

Numeric, percentage of diffferentially expressed genes.

Examples

data(deg_list)
deg_counts <- get_deg_counts(deg_list)